Image Analysis

 


Macro Writing Service

  • Custom analysis scripts designed for your specific dataset
  • Expert consultation before the start of an image analysis project which considers the feasibility of both the imaging and the analysis
     

Platforms

  • Imaris Bitplane - Work in 4D! Imaris loads, processes, visualizes, and measures a range of multi-dimensional images.  Results are displayed with advanced movie generation and export functions.
  • SVI Huygens Professional - Restore images and reduces out of focus blur by removing the PSF effect. 
  • Metamorph Imaging System - Metamorph's extensive analytical functions can measure areas and distances, count cells, graph intensity levels over time, deconvolve images, or color combine multi-fluorescence images.
  • ImageJ/Fiji - A powerful and free NIH program for Macs, PCs and Linux
     

Workstations

Workstation 1 (calendar link) - Dell Optiplex 9010 3.39 GHz processor (4 cores, w/ HT), 32 GB RAM and 1 GB AMD Radeon HD 7570

    • FIJI
    • Huygens Pro (Confocal, Widefield, Spinning Disk)
    • LASX (FRAP, FRAP XT, FRET AB, FRET SE - Dongle 3)
    • MATLAB
    • MetaMorph

Workstation  2 (calendar link) - Dell Optiplex 980 2.93 GHz processor (4 cores, w/ HT), 16 GB RAM and 512 MB ATI Radeon HD 4550

    • Auto aligner
    • FIJI
    • LASX (Live Data Mode, FRAP, FRAP XT, FRET AB, FRET SE - Dongle 2)
    • MATLAB
    • MetaMorph
    • Nikon - NIS Elements viewer 
    • Olympus - Fv10  viewer
    • Zeiss - LSM Image browser
    • Zeiss - ZEN Blue 2011
    • Zeiss - Zen Black 2011

Workstation 3 (calendar link) - Dell Optiplex 9010 3.39 GHz processor (4 cores, w/ HT), 32 GB RAM and 4 GB Nvidia Quadro M2000

    • FIJI
    • Huygens Pro (Confocal, Widefield, Spinning Disk, STED)
    • Imaris F1
    • LASX (FRAP, FRAP XT, FRET AB, FRET SE - Dongle 4)
    • MATLAB
    • MetaMorph
    • QuickTime