Image Analysis

Macro Writing Service

  • Custom analysis scripts designed for your specific dataset
  • Expert consultation before the start of an image analysis project which considers the feasibility of both the imaging and the analysis
     

Platforms

  • Imaris Bitplane - Work in 4D! Imaris loads, processes, visualizes, and measures a range of multi-dimensional images.  Results are displayed with advanced movie generation and export functions.
  • SVI Huygens Professional - Restore images and reduces out of focus blur by removing the PSF effect. 
  • Metamorph Imaging System - Metamorph's extensive analytical functions can measure areas and distances, count cells, graph intensity levels over time, deconvolve images, or color combine multi-fluorescence images.
  • ImageJ/Fiji - A powerful and free NIH program for Macs, PCs and Linux
     

Workstations

Workstation 1 (calendar link) - Dell Optiplex 9010 3.39 GHz processor (4 cores, w/ HT), 32 GB RAM and 1 GB AMD Radeon HD 7570

    • FIJI
    • Huygens Pro (Confocal, Widefield, Spinning Disk)
    • LASX (FRAP, FRAP XT, FRET AB, FRET SE - Dongle 3)
    • MATLAB
    • MetaMorph

Workstation 2 (calendar link) - Dell Optiplex 9010 3.39 GHz processor (4 cores, w/ HT), 32 GB RAM and 4 GB Nvidia Quadro M2000 (769 CUDA)

    • FIJI
    • LASX (FRAP, FRAP XT, FRET AB, FRET SE - Dongle 4)
    • MATLAB
    • MetaMorph
    • QuickTime

Workstation 3 (calendar link) - Dell Precision 7910 2.1GHz processor (2 processors, 16 cores, w/HT), 256GB RAM and 8GB NVIDIA GeForce GTX 1080 (2560 CUDA)

    • FIJI
    • Huygens Pro (Confocal, Widefield, Spinning Disk, STED)
    • Imaris F1
    • LASX (Live Data Mode, FRAP, FRAP XT, FRET AB, FRET SE - Dongle 2)
    • MATLAB
    • QuickTime

 

Sample Scripts

lif_2_tif_PC_SPE_tiling (movie) (script & dataset)